Package: ActCR 0.3.0
ActCR: Extract Circadian Rhythms Metrics from Actigraphy Data
Circadian rhythms are rhythms that oscillate about every 24 h, which has been observed in multiple physiological processes including core body temperature, hormone secretion, heart rate, blood pressure, and many others. Measuring circadian rhythm with wearables is based on a principle that there is increased movement during wake periods and reduced movement during sleep periods, and has been shown to be reliable and valid. This package can be used to extract nonparametric circadian metrics like intradaily variability (IV), interdaily stability (IS), and relative amplitude (RA); and parametric cosinor model and extended cosinor model coefficient. Details can be found in Junrui Di et al (2019) <doi:10.1007/s12561-019-09236-4>.
Authors:
ActCR_0.3.0.tar.gz
ActCR_0.3.0.zip(r-4.5)ActCR_0.3.0.zip(r-4.4)ActCR_0.3.0.zip(r-4.3)
ActCR_0.3.0.tgz(r-4.4-any)ActCR_0.3.0.tgz(r-4.3-any)
ActCR_0.3.0.tar.gz(r-4.5-noble)ActCR_0.3.0.tar.gz(r-4.4-noble)
ActCR_0.3.0.tgz(r-4.4-emscripten)ActCR_0.3.0.tgz(r-4.3-emscripten)
ActCR.pdf |ActCR.html✨
ActCR/json (API)
# Install 'ActCR' in R: |
install.packages('ActCR', repos = c('https://junruidi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/junruidi/actcr/issues
- example_activity_data - Activity/Wear Data from 50 Subjects from NHANES 2003 - 2006
Last updated 2 years agofrom:47bdbd99fe. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 04 2024 |
R-4.5-win | OK | Nov 04 2024 |
R-4.5-linux | OK | Nov 04 2024 |
R-4.4-win | OK | Nov 04 2024 |
R-4.4-mac | OK | Nov 04 2024 |
R-4.3-win | OK | Nov 04 2024 |
R-4.3-mac | OK | Nov 04 2024 |
Exports:ActCosinorActCosinor_longActExtendCosinorActExtendCosinor_longbin_dataISIS_longIVIV_longRARA_long
Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecommonmarkcosinorcosinor2cowplotcrayondata.tabledigestdplyrevaluatefansifarverfastmapfontawesomeforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminpack.lmmunsellnlmennetpillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownrpartrstudioapisassscalesshinysourcetoolsstringistringrtibbletidyselecttinytexutf8vctrsviridisviridisLitewithrxfunxtableyamlzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Cosinor Model for Circadian Rhythmicity | ActCosinor |
Cosinor Model for Circadian Rhythmicity for the Whole Dataset | ActCosinor_long |
Extended Cosinor Model for Circadian Rhythmicity | ActExtendCosinor |
Cosinor Model for Circadian Rhythmicity for the Whole Dataset | ActExtendCosinor_long |
Bin data into longer windows | bin_data |
Activity/Wear Data from 50 Subjects from NHANES 2003 - 2006 | example_activity_data |
Interdaily Statbility | IS |
Interdaily Statbility for the Whole Dataset | IS_long |
Intradaily Variability | IV |
Intradaily Variability for the Whole Dataset | IV_long |
Relative Amplitude | RA |
Relative Amplitude for the Whole Datset | RA_long |